1. Data from public papers

GEO	Paper
GSE63525	A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping PMID:25497547
GSE35156	Topological domains in mammalian genomes identified by analysis of chromatin interactions. PMID:22495300
GSE18199	Comprehensive mapping of long-range interactions reveals folding principles of the human genome. PMCID:19815776

2. Public Data Meta Information

Key	Data Category	Organism	Cell	Data Type	Lab	Antibody	Peak or signals	Replicate number	File type
GSE18199_GM06690_1000000_Matrix	Lieberman-Aiden and van Berkum et al. | Science 2009|GSE18199	hg18	GM06690	Hi-C Heatmap	Job Dekker				Image
GSE18199_GM06690_100000_Matrix	Lieberman-Aiden and van Berkum et al. | Science 2009|GSE18199	hg18	GM06690	Hi-C Heatmap	Job Dekker				Image
GM12878_CTCF_signal	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	CTCF	Signal		bigWig
GM12878_DNase-seq_signal	Encode	hg18	GM12878	DNase-seq	Crawford - Duke University		Signal		bigWig
GM12878_H3K4me1_signal	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K4me1	Signal		bigWig
GM12878_H3K4me2_signal	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K4me2	Signal		bigWig
GM12878_H3K4me3_signal	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K4me3	Signal		bigWig
GM12878_H3K27ac_signal	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K27ac	Signal		bigWig
GM12878_H3K27me3_signal	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K27me3	Signal		bigWig
GM12878_H3K36me3_signal	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K36me3	Signal		bigWig
GM12878_H3K9ac_signal	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K9ac	Signal		bigWig
GM12878_H4K20me1_signal	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H4K20me1	Signal		bigWig
GM12878_CTCF	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	CTCF	Peaks		broadPeak
GM12878_H3K4me1	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K4me1	Peaks		broadPeak
GM12878_H3K4me2	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K4me2	Peaks		broadPeak
GM12878_H3K4me3	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K4me3	Peaks		broadPeak
GM12878_H3K27ac	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K27ac	Peaks		broadPeak
GM12878_H3K27me3	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K27me3	Peaks		broadPeak
GM12878_H3K36me3	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K36me3	Peaks		broadPeak
GM12878_H3K9ac	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K9ac	Peaks		broadPeak
GM12878_H4K20me1	Encode	hg18	GM12878	ChIP-seq	Bernstein - Broad Institute	H4K20me1	Peaks		broadPeak
GM12878_DNase-seq	Encode	hg18	GM12878	DNase-seq	Crawford - Duke University		Peaks		narrowPeak
GM12878_RNA-Seq_minus_signal	Encode	hg19	GM12878	RNA-Seq	Gingeras - CSHL		Minus signal		bigWig
GM12878_RNA-Seq_plus_signal	Encode	hg19	GM12878	RNA-Seq	Gingeras - CSHL		Plus signal		bigWig
GM12878_EZH2_signal	Encode	hg19	GM12878	ChIP-seq	Bernstein - Broad Institute	EZH2	Signal		bigWig
GM12878_H2AZ_signal	Encode	hg19	GM12878	ChIP-seq	Bernstein - Broad Institute	H2AZ	Signal		bigWig
GM12878_H3K79me2_signal	Encode	hg19	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K79me2	Signal		bigWig
GM12878_H3K9me3_signal	Encode	hg19	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K9me3	Signal		bigWig
GM12878_RIP-Seq_signal	Encode	hg19	GM12878	RIP-Seq	SunyAlbany	ripInput	Signal		bigWig
GM12878_EZH2	Encode	hg19	GM12878	ChIP-seq	Bernstein - Broad Institute	EZH2	Peaks		broadPeak
GM12878_H2AZ	Encode	hg19	GM12878	ChIP-seq	Bernstein - Broad Institute	H2AZ	Peaks		broadPeak
GM12878_H3K79me2	Encode	hg19	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K79me2	Peaks		broadPeak
GM12878_H3K9me3	Encode	hg19	GM12878	ChIP-seq	Bernstein - Broad Institute	H3K9me3	Peaks		broadPeak
GM12878_Elavl1	Encode	hg19	GM12878	RIP-Seq	SunyAlbany	ELAVL1	Peaks		broadPeak
GM12878_Pabpc1	Encode	hg19	GM12878	RIP-Seq	SunyAlbany	PABPC1	Peaks		broadPeak
GM12878_RIP-seq	Encode	hg19	GM12878	RIP-Seq	SunyAlbany	ripInput	Peaks		broadPeak
GM12878_5C	Encode	hg19	GM12878		Dekker - UMass		Peaks		bed
GSE63525_GM12878_combined_1000000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	GM12878	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_GM12878_combined_Interaction	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	GM12878	Hi-C Interactions	Erez Lieberman Aiden				GFF3
GSE63525_GM12878_combined_TAD	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	GM12878	Hi-C TAD	Erez Lieberman Aiden				GFF3
GSE63525_GM12878_combined_500000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	GM12878	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_GM12878_combined_250000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	GM12878	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_GM12878_combined_100000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	GM12878	Hi-C Heatmap	Erez Lieberman Aiden				Image
H1-hESC_DNase-seq_signal	Encode	hg18	H1-hESC	DNase-seq	Crawford - Duke University		Signal		bigWig
H1-hESC_CTCF_signal	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	CTCF	Signal		bigWig
H1-hESC_H3K27me3_signal	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K27me3	Signal		bigWig
H1-hESC_H3K36me3_signal	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K36me3	Signal		bigWig
H1-hESC_H3K4me1_signal	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K4me1	Signal		bigWig
H1-hESC_H3K4me2_signal	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K4me2	Signal		bigWig
H1-hESC_H3K4me3_signal	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K4me3	Signal		bigWig
H1-hESC_H3K9ac_signal	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K9ac	Signal		bigWig
H1-hESC_H4K20me1_signal	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H4K20me1	Signal		bigWig
H1-hESC_CTCF	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	CTCF	Peaks		bigWig
H1-hESC_H3K27me3	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K27me3	Peaks		broadPeak
H1-hESC_H3K36me3	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K36me3	Peaks		broadPeak
H1-hESC_H3K4me1	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K4me1	Peaks		broadPeak
H1-hESC_H3K4me2	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K4me2	Peaks		broadPeak
H1-hESC_H3K4me3	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K4me3	Peaks		broadPeak
H1-hESC_H3K9ac	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K9ac	Peaks		broadPeak
H1-hESC_H4K20me1	Encode	hg18	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H4K20me1	Peaks		broadPeak
H1-hESC_RNA-Seq_minus_signal	Encode	hg19	H1-hESC	RNA-Seq	Gingeras - CSHL		Minus signal	2	bigWig
H1-hESC_RNA-Seq_plus_signal	Encode	hg19	H1-hESC	RNA-Seq	Gingeras - CSHL		Plus signal	2	bigWig
H1-hESC_EZH2_signal	Encode	hg19	H1-hESC	ChIP-seq	Bernstein - Broad Institute	EZH2	Signal		bigWig
H1-hESC_H2AZ_signal	Encode	hg19	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H2AZ	Signal		bigWig
H1-hESC_H3K9me3_signal	Encode	hg19	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K9me3	Signal		bigWig
H1-hESC_H3K27ac_signal	Encode	hg19	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K27ac	Signal		bigWig
H1-hESC_H3K79me2_signal	Encode	hg19	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K79me2	Signal		bigWig
H1-hESC_RAD21_signal	Encode	hg19	H1-hESC	ChIP-seq	Snyder - Stanford		Signal		bigWig
H1-hESC_ZNF143_signal	Encode	hg19	H1-hESC	ChIP-seq	Snyder - Stanford		Signal		bigWig
H1-hESC_EZH2	Encode	hg19	H1-hESC	ChIP-seq	Bernstein - Broad Institute	EZH2	Peaks		broadPeak
H1-hESC_H2AZ	Encode	hg19	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H2AZ	Peaks		broadPeak
H1-hESC_H3K9me3	Encode	hg19	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K9me3	Peaks		broadPeak
H1-hESC_H3K27ac	Encode	hg19	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K27ac	Peaks		broadPeak
H1-hESC_H3K79me2	Encode	hg19	H1-hESC	ChIP-seq	Bernstein - Broad Institute	H3K79me2	Peaks		broadPeak
H1-hESC_RAD21	Encode	hg19	H1-hESC	ChIP-seq	Snyder - Stanford		Peaks		narrowPeak
H1-hESC_ZNF143	Encode	hg19	H1-hESC	ChIP-seq	Snyder - Stanford		Peaks		narrowPeak
H1-hESC_5C	Encode	hg19	H1-hESC				Peaks		bed
HeLa-S3_DNase-seq_signal	Encode	hg18	HeLa-S3	DNase-seq	Crawford - Duke University		Signal		bigWig
HeLa-S3_ChIA-PET_Pol2_signal	Encode	hg19	HeLa-S3	ChIA-PET	GIS-Ruan	POL2	Signal		bigWig
HeLa-S3_CTCF_signal	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	CTCF	Signal		bigWig
HeLa-S3_H2AZ_signal	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H2AZ	Signal		bigWig
HeLa-S3_EZH2_signal	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	EZH2	Signal		bigWig
HeLa-S3_H3K4me1_signal	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K4me1	Signal		bigWig
HeLa-S3_H3K9me3_signal	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K9me3	Signal		bigWig
HeLa-S3_H3K27ac_signal	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K27ac	Signal		bigWig
HeLa-S3_H3K27me3_signal	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K27me3	Signal		bigWig
HeLa-S3_H3K36me3_signal	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K36me3	Signal		bigWig
HeLa-S3_H3K4me2_signal	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K4me2	Signal		bigWig
HeLa-S3_H3K4me3_signal	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K4me3	Signal		bigWig
HeLa-S3_H3K79me2_signal	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K79me2	Signal		bigWig
HeLa-S3_H3K9ac_signal	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K9ac	Signal		bigWig
HeLa-S3_H4K20me1_signal	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H4K20me1	Signal		bigWig
HeLa-S3_CTCF	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	CTCF	Peaks		broadPeak
HeLa-S3_EZH2	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	EZH2	Peaks		broadPeak
HeLa-S3_H2AZ	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H2AZ	Peaks		broadPeak
HeLa-S3_H3K4me1	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K4me1	Peaks		broadPeak
HeLa-S3_H3K9me3	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K9me3	Peaks		broadPeak
HeLa-S3_H3K27ac	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K27ac	Peaks		broadPeak
HeLa-S3_H3K27me3	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K27me3	Peaks		broadPeak
HeLa-S3_H3K36me3	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K36me3	Peaks		broadPeak
HeLa-S3_H3K4me2	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K4me2	Peaks		broadPeak
HeLa-S3_H3K4me3	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K4me3	Peaks		broadPeak
HeLa-S3_H3K79me2	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K79me2	Peaks		broadPeak
HeLa-S3_H3K9ac	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H3K9ac	Peaks		broadPeak
HeLa-S3_H4K20me1	Encode	hg19	HeLa-S3	ChIP-seq	Bernstein - Broad Institute	H4K20me1	Peaks		broadPeak
HeLa-S3_ChIA-PET_Pol2	Encode		HeLa-S3	ChIA-PET	GIS-Ruan	POL2	Interactions		bed
HepG2_DNase-seq_signal	Encode	hg18	HepG2	DNase-seq	Crawford - Duke University		Signal		bigWig
HepG2_CTCF_signal	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	CTCF	Signal		bigWig
HepG2_H3K27ac_signal	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K27ac	Signal		bigWig
HepG2_H3K27me3_signal	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K27me3	Signal		bigWig
HepG2_H3K4me2_signal	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K4me2	Signal		bigWig
HepG2_H3K4me3_signal	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K4me3	Signal		bigWig
HepG2_H3K9ac_signal	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K9ac	Signal		bigWig
HepG2_H4K20me1_signal	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	H4K20me1	Signal		bigWig
HepG2_CTCF	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	CTCF	Peaks		broadPeak
HepG2_H3K27ac	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K27ac	Peaks		broadPeak
HepG2_H3K27me3	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K27me3	Peaks		broadPeak
HepG2_H3K36me3	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K36me3	Peaks		broadPeak
HepG2_H3K4me2	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K4me2	Peaks		broadPeak
HepG2_H3K4me3	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K4me3	Peaks		broadPeak
HepG2_H3K9ac	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K9ac	Peaks		broadPeak
HepG2_H4K20me1	Encode	hg18	HepG2	ChIP-seq	Bernstein - Broad Institute	H4K20me1	Peaks		broadPeak
HepG2_RNA-Seq_minus_signal	Encode	hg19	HepG2	RNA-Seq	Wold - CalTech		Minus Raw signal		bigWig
HepG2_RNA-Seq_plus_signal	Encode	hg19	HepG2	RNA-Seq	Wold - CalTech		Plus Raw signal		bigWig
HepG2_EZH2_signal	Encode	hg19	HepG2	ChIP-seq	Bernstein - Broad Institute	EZH2	Signal		bigWig
HepG2_H2AZ_signal	Encode	hg19	HepG2	ChIP-seq	Bernstein - Broad Institute	H2AZ	Signal		bigWig
HepG2_H3K4me1_signal	Encode	hg19	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K4me1	Signal		bigWig
HepG2_H3K9me3_signal	Encode	hg19	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K9me3	Signal		bigWig
HepG2_H3K79me2_signal	Encode	hg19	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K79me2	Signal		bigWig
HepG2_RAD21_signal	Encode	hg19	HepG2	ChIP-seq	Snyder - Stanford	RAD21	Signal		bigWig
HepG2_SMC3_signal	Encode	hg19	HepG2	ChIP-seq	Snyder - Stanford	SMC3	Signal		bigWig
HepG2_EZH2	Encode	hg19	HepG2	ChIP-seq	Bernstein - Broad Institute	EZH2	Peaks		broadPeak
HepG2_H2AZ	Encode	hg19	HepG2	ChIP-seq	Bernstein - Broad Institute	H2AZ	Peaks		broadPeak
HepG2_H3K4me1	Encode	hg19	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K4me1	Peaks		broadPeak
HepG2_H3K9me3	Encode	hg19	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K9me3	Peaks		broadPeak
HepG2_H3K79me2	Encode	hg19	HepG2	ChIP-seq	Bernstein - Broad Institute	H3K79me2	Peaks		broadPeak
HepG2_RAD21	Encode	hg19	HepG2	ChIP-seq	Snyder - Stanford	RAD21	Peaks		narrowPeak
HepG2_SMC3	Encode	hg19	HepG2	ChIP-seq	Snyder - Stanford	SMC3	Peaks		narrowPeak
GSE63525_HMEC_combined_1000000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	HMEC	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_HMEC_combined_Interaction	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	HMEC	Hi-C Interactions	Erez Lieberman Aiden				GFF3
GSE63525_HMEC_combined_TAD	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	HMEC	Hi-C TAD	Erez Lieberman Aiden				GFF3
GSE63525_HMEC_combined_500000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	HMEC	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_HMEC_combined_250000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	HMEC	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_HMEC_combined_100000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	HMEC	Hi-C Heatmap	Erez Lieberman Aiden				Image
HUVEC_CTCF_signal	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	CTCF	Signal		bigWig
HUVEC_H3K27ac_signal	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K27ac	Signal		bigWig
HUVEC_H3K27me3_signal	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K27me3	Signal		bigWig
HUVEC_H3K36me3_signal	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K36me3	Signal		bigWig
HUVEC_H3K4me1_signal	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K4me1	Signal		bigWig
HUVEC_H3K4me2_signal	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K4me2	Signal		bigWig
HUVEC_H3K4me3_signal	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K4me3	Signal		bigWig
HUVEC_H3K9ac_signal	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K9ac	Signal		bigWig
HUVEC_H3K9me1_signal	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K9me1	Signal		bigWig
HUVEC_H4K20me1_signal	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H4K20me1	Signal		bigWig
HUVEC_CTCF	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	CTCF	Peaks		broadPeak
HUVEC_H3K27ac	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K27ac	Peaks		broadPeak
HUVEC_H3K27me3	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K27me3	Peaks		broadPeak
HUVEC_H3K36me3	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K36me3	Peaks		broadPeak
HUVEC_H3K4me1	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K4me1	Peaks		broadPeak
HUVEC_H3K4me2	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K4me2	Peaks		broadPeak
HUVEC_H3K4me3	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K4me3	Peaks		broadPeak
HUVEC_H3K9ac	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K9ac	Peaks		broadPeak
HUVEC_H3K9me1	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K9me1	Peaks		broadPeak
HUVEC_H4K20me1	Encode	hg18	HUVEC	ChIP-seq	Bernstein - Broad Institute	H4K20me1	Peaks		broadPeak
HUVEC_DNase-seq_signal	Encode	hg19	HUVEC	DNase-seq	UW		Raw signal		bigWig
HUVEC_RNA-Seq_minus_signal	Encode	hg19	HUVEC	RNA-Seq	Gingeras - CSHL		Minus signal	3	bigWig
HUVEC_RNA-Seq_plus_signal	Encode	hg19	HUVEC	RNA-Seq	Gingeras - CSHL		Plus signal	3	bigWig
HUVEC_EZH2_signal	Encode	hg19	HUVEC	ChIP-seq	Bernstein - Broad Institute	EZH2	Signal		bigWig
HUVEC_H2AZ_signal	Encode	hg19	HUVEC	ChIP-seq	Bernstein - Broad Institute	H2AZ	Signal		bigWig
HUVEC_H3K9me3_signal	Encode	hg19	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K9me3	Signal		bigWig
HUVEC_H3K79me2_signal	Encode	hg19	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K79me2	Signal		bigWig
HUVEC_EZH2	Encode	hg19	HUVEC	ChIP-seq	Bernstein - Broad Institute	EZH2	Peaks		broadPeak
HUVEC_H2AZ	Encode	hg19	HUVEC	ChIP-seq	Bernstein - Broad Institute	H2AZ	Peaks		broadPeak
HUVEC_H3K9me3	Encode	hg19	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K9me3	Peaks		broadPeak
HUVEC_H3K79me2	Encode	hg19	HUVEC	ChIP-seq	Bernstein - Broad Institute	H3K79me2	Peaks		broadPeak
GSE63525_HUVEC_combined_1000000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	HUVEC	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_HUVEC_combined_Interaction	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	HUVEC	Hi-C Interactions	Erez Lieberman Aiden				GFF3
GSE63525_HUVEC_combined_TAD	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	HUVEC	Hi-C TAD	Erez Lieberman Aiden				GFF3
GSE63525_HUVEC_combined_500000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	HUVEC	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_HUVEC_combined_250000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	HUVEC	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_HUVEC_combined_100000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	HUVEC	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE35156_IMR90_40000_Matrix	Dixon et al. |Nature 2012|GSE35156	hg18	IMR90	Hi-C Heatmap	Bing Ren				Image
GSE35156_IMR90_40000_TAD	Dixon et al. |Nature 2012|GSE35156	hg18	IMR90	Hi-C TAD	Bing Ren				GFF3
IMR90_DNase-seq_signal	Encode	hg19	IMR90	DNase-seq	Duke		Signal		bigWig
IMR90_RNA-Seq_minus_signal	Encode	hg19	IMR90	RNA-Seq	Gingeras - CSHL		Signal		bigWig
IMR90_RNA-Seq_plus_signal	Encode	hg19	IMR90	RNA-Seq	Gingeras - CSHL		Signal		bigWig
IMR90_CTCF_signal	Encode	hg19	IMR90	ChIP-seq	Stanford	CTCF	Signal		bigWig
IMR90_RAD21_signal	Encode	hg19	IMR90	ChIP-seq	Stanford	RAD21	Signal		bigWig
IMR90_DNase-seq	Encode	hg19	IMR90	DNase-seq	Duke		Peaks		narrowPeak
IMR90_CTCF	Encode	hg19	IMR90	ChIP-seq	Stanford	CTCF	Peaks		narrowPeak
IMR90_RAD21	Encode	hg19	IMR90	ChIP-seq	Stanford	RAD21	Peaks		narrowPeak
GSE63525_IMR90_combined_1000000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	IMR90	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_IMR90_combined_Interaction	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	IMR90	Hi-C Interactions	Erez Lieberman Aiden				GFF3
GSE63525_IMR90_combined_TAD	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	IMR90	Hi-C TAD	Erez Lieberman Aiden				GFF3
GSE63525_IMR90_combined_500000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	IMR90	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_IMR90_combined_250000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	IMR90	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_IMR90_combined_100000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	IMR90	Hi-C Heatmap	Erez Lieberman Aiden				Image
K562_CTCF_signal	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	CTCF	Signal		bigWig
K562_H3K27ac_signal	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K27ac	Signal		bigWig
K562_H3K27me3_signal	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K27me3	Signal		bigWig
K562_H3K36me3_signal	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K36me3	Signal		bigWig
K562_H3K4me3_signal	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K4me3	Signal		bigWig
K562_H3K9ac_signal	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K9ac	Signal		bigWig
K562_H3K9me1_signal	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K9me1	Signal		bigWig
K562_H4K20me1_signal	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H4K20me1	Signal		bigWig
K562_CTCF	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	CTCF	Peaks		broadPeak
K562_H3K27ac	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K27ac	Peaks		broadPeak
K562_H3K27me3	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K27me3	Peaks		broadPeak
K562_H3K36me3	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K36me3	Peaks		broadPeak
K562_H3K4me1	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K4me1	Peaks		broadPeak
K562_H3K4me2	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K4me2	Peaks		broadPeak
K562_H3K4me3	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K4me3	Peaks		broadPeak
K562_H3K9ac	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K9ac	Peaks		broadPeak
K562_H3K9me1	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H3K9me1	Peaks		broadPeak
K562_H4K20me1	Encode	hg18	K562	ChIP-seq	Bernstein - Broad Institute	H4K20me1	Peaks		broadPeak
GSE18199_K562_100000_Matrix	Lieberman-Aiden and van Berkum et al. | Science 2009|GSE18199	hg18	K562	Hi-C Heatmap	Job Dekker				Image
GSE18199_K562_1000000_Matrix	Lieberman-Aiden and van Berkum et al. | Science 2009|GSE18199	hg18	K562	Hi-C Heatmap	Job Dekker				Image
K562_DNase-seq_signal	Encode	hg19	K562	DNase-seq	Crawford - Duke University		Signal		bigWig
K562_RNA-Seq_minus_signal	Encode	hg19	K562	RNA-Seq	Gingeras - CSHL		Minus signal	4	bigWig
K562_RNA-Seq_plus_signal	Encode	hg19	K562	RNA-Seq	Gingeras - CSHL		Plus signal	4	bigWig
K562_ChIA-PET_CTCF_signal	Encode	hg19	K562	ChIA-PET	GIS-Ruan	CTCF	Signal	1	bigWig
K562_ChIA-PET_Pol2_signal	Encode	hg19	K562	ChIA-PET	GIS-Ruan	POL2	Signal	1	bigWig
K562_RIP-Seq_signal	Encode	hg19	K562	RIP-Seq	SunyAlbany		Signal	1	bigWig
K562_EZH2_signal	Encode	hg19	K562	ChIP-seq	Bernstein - Broad Institute	EZH2	Signal		bigWig
K562_H2AZ_signal	Encode	hg19	K562	ChIP-seq	Bernstein - Broad Institute	H2AZ	Signal		bigWig
K562_H3K79me2_signal	Encode	hg19	K562	ChIP-seq	Bernstein - Broad Institute	H3K79me2	Signal		bigWig
K562_H3K9me3_signal	Encode	hg19	K562	ChIP-seq	Bernstein - Broad Institute	H3K9me3	Signal		bigWig
K562_RAD21_signal	Encode	hg19	K562	ChIP-seq	Snyder - Stanford	RAD21	Signal	1	bigWig
K562_EZH2	Encode	hg19	K562	ChIP-seq	Bernstein - Broad Institute	EZH2	Peaks		broadPeak
K562_H2AZ	Encode	hg19	K562	ChIP-seq	Bernstein - Broad Institute	H2AZ	Peaks		broadPeak
K562_H3K79me2	Encode	hg19	K562	ChIP-seq	Bernstein - Broad Institute	H3K79me2	Peaks		broadPeak
K562_H3K9me3	Encode	hg19	K562	ChIP-seq	Bernstein - Broad Institute	H3K9me3	Peaks		broadPeak
K562_RAD21	Encode	hg19	K562	ChIP-seq	Myers - Hudson Alpha	RAD21	Peaks	2	broadPeak
K562_DNase-seq	Encode	hg19	K562	ChIP-seq	Crawford - Duke University		Peaks		narrowPeak
K562_RIP-Seq	Encode	hg19	K562	RIP-Seq	SunyAlbany		Peaks		broadPeak
K562_5C	Encode	hg19	K562		Dekker - UMass		Peaks		bed
GSE63525_K562_combined_1000000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	K562	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_K562_combined_Interaction	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	K562	Hi-C Interactions	Erez Lieberman Aiden				GFF3
GSE63525_K562_combined_TAD	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	K562	Hi-C TAD	Erez Lieberman Aiden				GFF3
GSE63525_K562_combined_500000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	K562	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_K562_combined_250000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	K562	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_K562_combined_100000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	K562	Hi-C Heatmap	Erez Lieberman Aiden				Image
K562_SMC3	Encode		K562	ChIP-seq	Bernstein - Broad Institute	SMC3	Peaks		narrowPeak
K562_ZNF143	Encode		K562	ChIP-seq	Bernstein - Broad Institute	ZNF143	Peaks		narrowPeak
K562_ChIA-PET_CTCF	Encode		K562	ChIA-PET	GIS-Ruan	CTCF	Interactions	1	bed
K562_ChIA-PET_Pol2	Encode		K562	ChIA-PET	GIS-Ruan	POL2	Interactions	1	bed
GSE63525_KBM7_combined_1000000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	KBM7	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_KBM7_combined_Interaction	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	KBM7	Hi-C Interactions	Erez Lieberman Aiden				GFF3
GSE63525_KBM7_combined_TAD	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	KBM7	Hi-C TAD	Erez Lieberman Aiden				GFF3
GSE63525_KBM7_combined_500000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	KBM7	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_KBM7_combined_250000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	KBM7	Hi-C Heatmap	Erez Lieberman Aiden				Image
GSE63525_KBM7_combined_100000_Matrix	Rao and Huntley et al. | Cell 2014| GSE63525	hg19	KBM7	Hi-C Heatmap	Erez Lieberman Aiden				Image
ensembl_gene	Ensembl	hg18							GFF3
ensembl_gene	Ensembl	hg19							GFF3

3. Data from other public resources

Data Type	Source	Version
Gene	Ensembl	ensembl v54, ensembl v75
Transcript	Ensembl	ensembl v54, ensembl v75